|
2/16 |
2/17 |
2/18 |
2/19 |
2/20 |
| 6:30 AM |
Breakfast |
Breakfast |
Breakfast |
Breakfast |
Breakfast |
| 6:45 AM |
| 7:00 AM |
| 7:15 AM |
| 7:30 AM |
| 7:45 AM |
| 8:00 AM |
| 8:15 AM |
| 8:30 AM |
| 8:45 AM |
| 9:00 AM |
Break |
Break |
Break |
Break |
Break |
| 9:15 AM |
| 9:30 AM |
Invited Speaker Talk:
Petr Sulc
(ASU): Welcome talk & introduction to the oxDNA ecosystem
|
Invited Speaker Talk:
Oliver
Henrich* (University of Strathclyde): oxDNA3 – Introducing Sequence-Specific Curvature and Elasticity
into a Coarse-Grained DNA Model
|
Invited Speaker
Talk: Tom Ouldridge* (Imperial College London) Strand displacement
in unusual topologies
|
Hackathon |
Hackathon |
| 9:45 AM |
| 10:00 AM |
| 10:15 AM |
Invited Speaker Talk:
Shawn
Douglas (UC San Francisco): Decoupling Design from Fabrication: Preparing for Complexity We Can't
Yet Imagine
|
Invited Speaker Talk:
Vladimira
Petrakova (Heyrovsky Institute): Plasmon-driven Tuning of Nanodiamond Emission using DNA Origami
|
Keynote:
Aleksei Aksimentiev
(University of Illinois Urbana-Champaign): Multi-resolution simulations of self-assembled DNA systems
|
| 10:30 AM |
| 10:45 AM |
| 11:00 AM |
Invited Speaker Talk: Carlos
Castro (Ohio State University): Simulation guided design of nanomechanical DNA devices and assemblies
|
Invited Speaker Talk: Zev Bryant
(Stanford): Dynamics and mechanics of nucleic acids and nucleoprotein machines
|
| 11:15 AM |
Talk: Ryan Krueger*
(Harvard):
Differentiable Programming for Sensitivity Analysis and Design in Molecular Simulations
|
| 11:30 AM |
| 11:45 AM |
Lunch |
Lunch |
Lunch |
| 12:00 PM |
Lunch |
Lunch |
| 12:15 PM |
| 12:30 PM |
Invited Speaker Talk:
Gaurav
Arya* (Duke): Modeling the folding mechanism, surface-placement, and higher-order assembly of DNA
origami structures
|
Invited Speaker Talk:
Cameron
Glasscock (Rice): Computational design of nucleic acids and protein-nucleic acid interactions
|
Invited Speaker Talk:
Flavio
Romano (Ca Foscari University) A simulation oriented model for proteins based on oxDNA
|
| 12:45 PM |
| 1:00 PM |
Hackathon |
Hackathon |
| 1:15 PM |
Invited Speaker Talk:
Greg
Tikhomirov (UC Berkeley): Programming Addressable Origami Self-Assembly
|
Invited Speaker Talk:
David Doty
(UC Davis): Subdomains and dependent domains in DNA sequence design
|
Invited Speaker Talk:
John Doye*
(Oxford)
|
| 1:30 PM |
| 1:45 PM |
| 2:00 PM |
Talk: Michael Matthies
(Technical University Munich): OAT boilerplate and other tools to make consistent, reproducible
simulations
|
Poster Session 2
|
Snack &
Additional Activities TBD
|
| 2:15 PM |
| 2:30 PM |
Talk:
Eryk Ratajczyk (Oxford):
Controlling DNA-RNA strand displacement kinetics with base distribution
|
| 2:45 PM |
| 3:00 PM |
Talk: Rizal Hariadi (ASU) Multi-axial DNA origami force spectroscopy
unlocks conformational dynamics hidden under single-axial tension
|
Invited Speaker Talk: Do-Nyun Kim* (Seoul National University) Toward
generative design of DNA origami
|
| 3:15 PM |
| 3:30 PM |
Snack |
| 3:45 PM |
Snack |
| 4:00 PM |
Talk: Daniel Duke (Duke):
Predicting the pathways of DNA origami folding with a new mesoscopic model
|
Talk: Matthew Sample (ASU):
Unlocking the Thermodynamics of DNA Origami Dimerization via Restrained Umbrella Sampling
|
Carlos Castro MagicDNA Tutorial |
| 4:15 PM |
| 4:30 PM |
Talk:
Erik Poppleton (Heidelberg
University): Connecting to the wider world of nucleic acid simulations
|
Talk: Jared Huzar (UC Berkeley) High-Throughput Characterization and
Prediction of the Thermal Stability of Multivalent DNA Interactions
|
| 4:45 PM |
| 5:00 PM |
Poster Session 1 |
|
| 5:15 PM |
| 5:30 PM |
|
| 5:45 PM |
| 6:00 PM |
Dinner |
Dinner |
Dinner |
Dinner |
Dinner |
| 6:15 PM |
| 6:30 PM |
| 6:45 PM |
| 7:00 PM |
| 7:15 PM |