oxView

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The viewer supports live relaxation using ox-serve nodes.

List of available servers:

NANOBASE.org

Add host:

Pick a background color: Or upload a background image: Choose file(s)

Choose a file(s) or drop it here0 file(s) selected

Import PDB

Type a PDB identifier below to load the corresponding structure into oxView. If you already have a PDB file on your computer you can simply drag and drop it (or use the "Open" dialog).

PDB ID

Import Nanobase

Type the link of a Nanobase structure to load it into oxView.

URL

TacoxDNA importer

Powered by tacoxDNA, you can now import common design formats.

To load oxView, oxDNA or PDB files, simply click on "Open" instead.

Select file Choose file(s)

File format

Lattice type

Scaffold sequence Set sequence:

Default base (for single-stranded staple bases)

Save the current stucture to oxDNA configuration and/or topology files

Topology Use new top format (experimental)

Configuration

External forces

Name

3D Export Options

Export format:

Material options for glTF:

Backbone metalness

Backbone roughness

Nucleoside metalness

Nucleoside roughness

Export flat hierarchy
Export camera

File name

Faces multiplier

To hide or change the scaling of the backbones, nucleosides, etc. before export, use the "Visual Components" tool in the "View" menu.

UNF Export Options

Structure name: Author: Publication DOI:

File name